Nextflow workflow report

[fervent_mestorf]

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: null.

The full error message was:

SIGHUP
Run times
23-Oct-2020 15:29:19 - 24-Oct-2020 15:32:47 (duration: 1d 3m 28s)
  327 succeeded  
  0 cached  
  0 ignored  
  6 failed  
Nextflow command
nextflow run -c /home/jlsmith3/nextflow.config STAR_Fusion.nf --sample_sheet sample_sheets/BEAT_AML_fq_sample_sheet.txt --genome_lib 's3://fh-pi-meshinchi-s/SR/Reference_Data/GRCh37_gencode_v19_CTAT_lib_Oct012019/ctat_genome_lib_build_dir/' --output_folder 's3://fh-pi-meshinchi-s/SR/BEAT_AML/RNAseq_Illumina_Data/starfusion/' -with-report STAR-Fusion_BEAT_AML_report.html -work-dir 's3://fh-pi-meshinchi-s/SR/work' -cache TRUE -process.queue cpu-spot-50 ' #temporary' bc spot-30 is not really working
CPU-Hours
7'393.7 (1.5% failed)
Launch directory
/home/jlsmith3/scripts/STAR-fusion-NF
Work directory
s3://fh-pi-meshinchi-s/SR/work
Project directory
/home/jlsmith3/scripts/STAR-fusion-NF
Script name
STAR_Fusion.nf
Script ID
50215d3e1bcdea339a046d7127b8243e
Workflow session
3799865e-5fa7-4875-b16a-55ca487675a4
Workflow profile
standard
Nextflow version
version 20.04.1, build 5335 (03-05-2020 19:37 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)